##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index6_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	22902433	
Filtered Sequences	0	
Sequence length	90	
%GC	50	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.93057868567938	33.0	31.0	34.0	30.0	34.0
2	32.059167687555295	33.0	31.0	34.0	30.0	34.0
3	32.12861297312823	34.0	31.0	34.0	30.0	34.0
4	35.64548508885497	37.0	35.0	37.0	33.0	37.0
5	35.60023692679289	37.0	35.0	37.0	33.0	37.0
6	35.57021954828991	37.0	35.0	37.0	33.0	37.0
7	35.58321432487107	37.0	35.0	37.0	33.0	37.0
8	35.568605745948474	37.0	35.0	37.0	33.0	37.0
9	37.22877556284086	39.0	37.0	39.0	33.0	39.0
10-14	37.408002468558685	39.2	37.2	39.4	33.0	39.4
15-19	38.32140354695066	40.0	38.0	41.0	33.0	41.0
20-24	38.12026537966513	40.0	38.0	41.0	33.0	41.0
25-29	37.79162242718928	40.0	37.2	41.0	32.2	41.0
30-34	37.5820605871874	39.8	37.0	41.0	31.8	41.0
35-39	37.55740723267262	40.0	37.0	41.0	31.4	41.0
40-44	37.22789217198015	39.2	36.0	41.0	31.0	41.0
45-49	36.75494187888248	39.0	35.0	40.6	30.0	41.0
50-54	36.41184571089019	38.4	35.0	40.0	30.0	41.0
55-59	36.099104370264946	38.0	34.8	40.0	29.6	41.0
60-64	35.26862086661273	36.6	34.0	39.8	28.4	41.0
65-69	34.37587454573058	35.4	33.4	39.0	27.6	40.8
70-74	33.45124179601355	35.0	32.8	37.4	26.0	39.6
75-79	32.48134792491261	35.0	32.0	36.2	25.4	38.8
80-84	31.508159050176022	34.6	31.2	35.0	23.6	36.8
85-89	30.37948912240023	34.0	31.0	35.0	15.8	36.0
90	29.410980702355946	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	298.0
11	2837.0
12	8812.0
13	16846.0
14	27473.0
15	37707.0
16	46722.0
17	54468.0
18	63056.0
19	72018.0
20	84085.0
21	97295.0
22	113750.0
23	134196.0
24	160126.0
25	190502.0
26	228693.0
27	276042.0
28	333321.0
29	405604.0
30	497007.0
31	614507.0
32	773335.0
33	1003241.0
34	1367105.0
35	1970908.0
36	3023168.0
37	4288341.0
38	4598280.0
39	2367387.0
40	45303.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.71711337393717	11.876519843983388	10.592258909784826	53.81410787229461
2	21.930256179155105	18.715016956050512	34.20618784491786	25.148539019876527
3	25.783070110891316	20.52801746967913	22.032763511295425	31.656148908134135
4	28.000818442458048	25.728443710436146	19.05757853646885	27.213159310636957
5	29.82339070332129	28.533174257892934	21.678541192243692	19.964893846542086
6	25.363813398463858	31.737314106484078	21.290138248654745	21.608734246397322
7	22.257887511755417	18.854099182868783	36.446602615876714	22.44141068949909
8	22.22595537745096	22.209522992718483	28.457161083047428	27.107360546783127
9	21.882535930662396	20.877881270467437	31.20199137974137	26.0375914191288
10-14	24.99396050128979	25.697404350484483	24.27140842140486	25.037226726820865
15-19	25.297634089475235	24.68002698400143	24.741596256712583	25.280742669810753
20-24	25.079737978948298	24.917143621149897	25.07575275033832	24.927365649563484
25-29	24.94274054027387	24.937815051694006	25.00166213406731	25.11778227396481
30-34	24.968001462710426	24.879720058814094	24.959617166026497	25.192661312448983
35-39	24.99736953431675	25.0385740500543	24.912737881605292	25.051318534023657
40-44	24.96169825137651	24.871500719349005	25.04201453177124	25.124786497503248
45-49	24.90179655217014	24.93999969906955	24.969062280019383	25.189141468740928
50-54	24.926246194897487	25.026798944217095	25.01771161088301	25.029243250002413
55-59	24.93902992175339	24.967436981284507	24.950031555248827	25.14350154171327
60-64	24.875993810259327	24.982145667374088	25.054314887944674	25.087545634421915
65-69	24.896080518553994	25.113480299932416	25.024005536235723	24.96643364527787
70-74	24.970860975929615	25.02527687585543	24.93502093913105	25.068841209083903
75-79	24.953604234800288	24.99529942295865	25.003191501866723	25.04790484037434
80-84	24.900296369431025	25.12762561612129	25.003559728950776	24.968518285496906
85-89	25.015293330934025	25.07800100912842	24.915486062271665	24.991219597665886
90	24.729458291241837	25.225756925287385	25.133763726652948	24.91102105681783
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.53122124623178
2	47.07879519903163
3	57.439219019025444
4	55.21397775309501
5	49.78828454986338
6	46.97254764486118
7	44.69929820125451
8	49.333315924234086
9	47.920127349791194
10-14	50.03118722811066
15-19	50.57837675928598
20-24	50.007103628511786
25-29	50.06052281423868
30-34	50.1606627751594
35-39	50.04868806834041
40-44	50.086484748879755
45-49	50.09093802091107
50-54	49.955489444899904
55-59	50.082531463466665
60-64	49.963539444681246
65-69	49.86251416383186
70-74	50.039702185013525
75-79	50.00150907517463
80-84	49.86881465492793
85-89	50.00651292859991
90	49.64047934805967
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	65.0
1	34.5
2	4.5
3	5.0
4	5.5
5	9.5
6	13.5
7	15.5
8	24.5
9	37.5
10	43.0
11	59.5
12	101.0
13	168.0
14	300.5
15	502.5
16	824.0
17	1446.0
18	2519.5
19	4448.0
20	5715.0
21	7619.5
22	12751.5
23	20490.5
24	31434.0
25	47251.5
26	69177.5
27	98040.5
28	131588.0
29	170411.5
30	192010.0
31	214029.0
32	260025.0
33	311708.5
34	367816.0
35	422410.5
36	478039.5
37	538940.0
38	592108.0
39	638044.0
40	662277.0
41	678692.0
42	710382.5
43	739669.0
44	760000.5
45	771905.0
46	775866.5
47	773033.0
48	775072.0
49	780034.0
50	781746.0
51	777314.5
52	774474.5
53	768699.0
54	766978.0
55	770955.0
56	764118.5
57	753117.5
58	735085.0
59	709184.5
60	695483.0
61	678581.5
62	642227.0
63	596698.5
64	541148.5
65	484022.0
66	423225.0
67	359223.0
68	300881.0
69	245322.5
70	217249.0
71	191925.0
72	145595.5
73	107222.0
74	74712.0
75	47993.5
76	28568.5
77	15477.5
78	7338.0
79	3103.0
80	1765.0
81	1234.5
82	496.0
83	204.5
84	90.0
85	45.5
86	29.0
87	19.5
88	11.5
89	6.5
90	3.0
91	3.5
92	2.5
93	2.0
94	2.5
95	1.5
96	1.0
97	0.5
98	0.0
99	0.5
100	1.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.008964113114095782
3	0.044528020232610224
4	0.04440576247947107
5	0.0443184355129431
6	0.008544943674761543
7	0.01492417857962951
8	0.011051227614114185
9	0.007545049908016323
10-14	0.010276637421011122
15-19	0.008945774451124908
20-24	0.012524433539440983
25-29	0.005028286732680323
30-34	0.010828543849467872
35-39	0.0067460081642854285
40-44	0.0020783818033656073
45-49	5.728649004234616E-4
50-54	9.815551037743457E-4
55-59	0.001656592555035528
60-64	6.497126309680723E-4
65-69	0.007309267098390813
70-74	0.002928946457348003
75-79	0.004320065034138513
80-84	0.0017832166565010799
85-89	0.0012810865989652716
90	0.012723539023124748
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.2902433E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.57391514565454
#Duplication Level	Relative count
1	100.0
2	30.06147478310514
3	15.20761757179704
4	9.75032878304397
5	6.738778048506968
6	4.892495590739022
7	3.7364026547319273
8	2.969751959954735
9	2.4702056295812986
10++	28.069406355452703
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	5090795	2.6060188	5.471805	1
CCTGG	5079685	2.5785296	6.3073955	1
CTTCT	5024640	2.551236	5.5620613	1
CTGGA	4749120	2.4759998	8.710891	1
TCCAG	4669580	2.390699	6.0431495	2
CTGCT	4644430	2.3578868	5.2361946	1
CTCCT	4676215	2.331281	7.8634214	1
CTGGG	4415760	2.2826073	8.357709	1
CAGGA	4289140	2.2550914	5.4557643	1
CTTCA	4307620	2.2056653	5.5670214	1
CTCCA	4382975	2.2035642	8.254292	1
CCCAG	4314465	2.1688447	7.345514	1
CTCTG	4036410	2.049207	6.480058	1
CTGCA	3940390	2.0173733	5.012898	1
TGGAA	3504615	1.876635	5.0709615	2
CTGGC	3667765	1.8618166	5.237714	1
CTGAA	3539210	1.8610392	5.4693503	1
CTCAG	3425975	1.7540067	5.8589883	1
CTGGT	3240915	1.6755159	5.144064	1
CTTGG	3144645	1.6257454	5.0640078	1
CTCCC	3157800	1.54575	5.229572	1
>>END_MODULE
